Frequently Asked Questions
A section to quickly get FAQs about Proteome Software products
- How to Completely Remove Scaffold from Your System
- Recommended FDR Settings for Loading Spectrum Mill Data into Scaffold
- Reference Libraries Used in Scaffold DIA
- DIA Proteomic Searches and FASTA File Size (Number of Entries)
- Processing Vendor Raw Data with ProteoWizard
- Scaffold Products and High Resolution Displays
- Changing Temp Space For Each Scaffold Batch Run
- Scaffold "Versioning Problem" Error Message
- Scaffold PTM Views and Displays
- Views and Displays in Scaffold Q+
- Using FASTA and GOA Databases in Scaffold
- Export Current View in Q+/Q+S to get More Decimal Places
- CID, ETD, HCD, and Other Fragmentation Modes in Scaffold
- Waters PLGS IdentityE Data Support in Scaffold
- FDR, Decoy Hits, and Forward/Decoy FASTAs in Scaffold
- Using MudPIT in Scaffold Analyses
- Parentheses in Scaffold Excel Exports
- Getting Started with Gene Ontology Annotations in Scaffold
- How do I add organism-specific GOA databases to Scaffold
- What do the Quantitative Value Tags Mean: Value Missing, No Values, Reference Missing, or No Data
- Where can I find general, in-product help