Scaffold DIA, PTM, LFQ, and Elements
To troubleshoot or specify a different temporary directory in a toolkit-based product, eg, Scaffold DIA, you can launch it like so:
This should work for all our products except Scaffold 5 and Scaffold Q+S.
Multiple instances sharing the same temp file can cause problems when running simultaneous Scaffold Batch runs. Here is an idea to work around this:
You can set your JVM settings before running the job to use different temp space, eg:
Scaffold has no built-in way to configure this, but if you are running from the command line, you might be able to do this with Python or bash: