Documentation
Find documentation about our products and information about the science in which we work
Getting Started with Scaffold Software
Supported Data Formats
- Configuring FragPipe for Scaffold
- Scaffold Software Supported Data Formats
- Loading PEAKS Data into Scaffold
- Configuring Proteome Discoverer 2.2 and forward for Compatibility with Scaffold
- Configuring Proteome Discoverer 2.0-2.1 for Compatibility with Scaffold
- Loading MaxQuant Results into Scaffold Products See all 8 articles
Frequently Asked Questions
- DIA: Peptide- vs Spectrum-centric searching and PTMs
- Scaffold Software Stuck in Viewer Mode
- Is Scaffold Software compatible with M1 and M2 Apple computers?
- Installing Scaffold Software when installations are blocked by your operating system
- Scaffold t-test
- Searching with MSFragger and X! Tandem in Scaffold 5 See all 48 articles
Using Scaffold Software
Presentations, Papers and Posters
- Presentations from Virtual Brunch 2021
- Presentations from Virtual Brunch 2020
- Chromatogram Libraries Improve Peptide Detection and Quantification by DIA Mass Spectrometry
- EncyclopeDIA: Library Searching for Data-Independent Acquisition
- Introduction to DIA: Data-Independent Analysis
- Proteome Software Conference Posters See all 8 articles