Scaffold DIA Citations

The following article provides a list of journal articles, presentations and posters that reference the use of Scaffold DIA. If you have an article that you would like to have added to the list contact sales@proteomesoftware.com.

Pleiotropic consequences of metabolic stress for the major histocompatibility complex class II molecule antigen processing and presentation machinery
Immunity (2021)
Cristina C Clement, Padma P Nanaware, Takahiro Yamazaki, Maria Pia Negroni, Karthik Ramesh, Kateryna Morozova, Sangeetha Thangaswamy, Austin Graves, Hei Jung Kim, Tsai Wanxia Li, Marco Vigano', Rajesh K Soni, Massimo Gadina, Harley Y Tse, Lorenzo Galluzzi, Paul A Roche, Lisa K Denzin, Lawrence J Stern, Laura Santambrogio
Immunity (2021)

Human Cerebral Cortex Proteome of Fragile X-Associated Tremor/Ataxia Syndrome
Front Mol Biosci (2021)
Katharine Nichole Holm, Anthony W. Herren, Sandra L. Taylor, Jamie L. Randol, Kyoungmi Kim, Glenda Espinal, Verónica Martínez-Cerdeño, Isaac N. Pessah, Randi J. Hagerman, and Paul J. Hagerman
Front Mol Biosci (2021)

Applicability of Artificial Vascularized Liver Tissue to Proteomic Analysis
Micromachines (2021)
Nobuhito Mori and Yasuyuki S. Kida
Micromachines (2021)

Data on proteomic analysis of milk extracellular vesicles from bovine leukemia virus-infected cattle
Data in Brief (2020)
Md. Matiur Rahman, Yassien Badr, Yuji O. Kamatari, Yuko Kitamura, Kaori Shimizub, Ayaka Okada, Yasuo Inoshima
Data in Brief (2020)

Deep Learning Neural Network Prediction Method Improves Proteome Profiling of Vascular Sap of Grapevines during Pierce's Disease Development
Biology (2020)
Cíntia Helena Duarte Sagawa, Paulo A. Zaini, Renata de A. B. Assis, Houston Saxe, Michelle Salemi, Aaron Jacobson, Phillip A. Wilmarth, Brett S. Phinney, and Abhaya M. Dandekar1
Biology (2020)

Discovery of Candidate Stool Biomarker Proteins for Biliary Atresia Using Proteome Analysis by Data-Independent Acquisition Mass Spectrometry
Proteomes (2020)
Eiichiro Watanabe, Yusuke Kawashima, Wataru Suda, Tomo Kakihara, Shinya Takazawa, Daisuke Nakajima, Ren Nakamura, Akira Nishi, Kan Suzuki, Osamu Ohara and Jun Fujishiro
Proteomes (2020)

Identification of Differentially Expressed Proteins in the serum for Systemic Juvenile Idiopathic Arthritis Using Next-generation Proteomics
Research Square (2020)
Hironori Sato, Yuzaburo Inoue, Yusuke Kawashima, Daisuke Nakajima, Ren Nakamura, Daigo Kato, Kanako Mitsunaga, Takeshi Yamamoto, Akiko Yamaide, Minako Tomiita, Akira Hoshioka, Osamu Ohara, Naoki Shimojo
Research Square (2020)

2019 Association of Biomolecular Resource Facilities Multi-Laboratory Data-Independent Acquisition Study
Bioarchive (2020)
Benjamin A. Neely, Paul M. Stemmer, Brian C. Searle, Laura E. Herring, LeRoy Martin, Mukul K. Midha, Brett S. Phinney, Baozhen Shan, Magnus Palmblad, Yan Wang, Pratik D. Jagtap, Joanna Kirkpatrick
Bioarchive (2020)

Development of Targeted Mass Spectrometry-Based Approaches for Quantitation of
Proteins Enriched in the Postsynaptic Density (PSD)
Proteomes (2019)
Rashaun S. Wilson, Navin Rauniyar, Fumika Sakaue, TuKiet T. Lam , Kenneth R. Williams and Angus C. Nairn
Proteomes (2019)

Optimization of Data-Independent Acquisition Mass Spectrometry for Deep and Highly Sensitive Proteomic Analysis
International Journal of Molecular Sciences (2019)
Yusuke Kawashima, Eiichiro Watanabe, Taichi Umeyama, Daisuke Nakajima, Masahira Hattori, Kenya Honda and Osamu Ohara
International Journal of Molecular Sciences (2019)

IS256-Mediated Overexpression of the WalKR Two-Component System Regulon Contributes to Reduced Vancomycin Susceptibility in a Staphylococcus aureus Clinical Isolate
Frontiers in Microbiology (2019)
Makoto Kuroda1, Tsuyoshi Sekizuka1, Hidehito Matsui, Jun Ohsuga, Toshio Ohshima and Hideaki Hanaki
Frontiers in Microbiology (2019)

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