Can I search data using MSFragger and X! Tandem at the same time?
Scaffold 5 introduced the ability to search data using MSFragger. This can be used to search either raw data or as a confirmatory search when search engine results are loaded.
Scaffold can also use X! Tandem as a confirmatory search engine but only when search engine results are loaded.
You cannot search data using both MSFragger and X! Tandem whether it is raw data or data from an existing search.