Product Documentation
Find documentation about our products and information about the science in which we work
Frequently Asked Questions
- Recommended FDR Settings for Loading Spectrum Mill Data into Scaffold
- Reference Libraries Used in Scaffold DIA
- DIA Proteomic Searches and FASTA File Size (Number of Entries)
- Processing Vendor Raw Data with ProteoWizard
- Scaffold Products and High Resolution Displays
- Changing Temp Space For Each Scaffold Batch Run See all 38 articles
Product Documentation
- Running Proteome Software programs on Mac computers with macOS Catalina
- Prosit-Derived Spectral Libraries for Scaffold DIA Searches
- Proteome Software File Extensions
- License Key Nomenclature
- Scaffold DIA File Compatibility Matrix
- Getting Started with Scaffold: A Primer for Viewer Users See all 11 articles
Special Help Topics
- Updating MSConvert in Scaffold DIA
- UniProt FASTA References
- Moving Proteome Software Products from One Computer to Another
- Thermo Windowing Schemes for DIA Proteomics
- Chromatogram Libraries Improve Peptide Detection and Quantification by DIA Mass Spectrometry
- Searching FASTAs with Scaffold DIA, Resource-Intensive Process See all 19 articles