Product Documentation
Find documentation about our products and information about the science in which we work
Frequently Asked Questions
- How to Completely Remove Scaffold from Your System
- Recommended FDR Settings for Loading Spectrum Mill Data into Scaffold
- Reference Libraries Used in Scaffold DIA
- DIA Proteomic Searches and FASTA File Size (Number of Entries)
- Processing Vendor Raw Data with ProteoWizard
- Scaffold Products and High Resolution Displays See all 39 articles
Product Documentation
Special Help Topics
- Data Independent Acquisition Proteomics Resources - DIA Tips
- Upgrading Scaffold, Workstation Hardware, or your Operataing System
- Updating MSConvert in Scaffold DIA
- UniProt FASTA References
- Moving Proteome Software Products from One Computer to Another
- Thermo Windowing Schemes for DIA Proteomics See all 22 articles
White Papers
PS Product Citations
Introductory Material
Presentations
Conference Posters
Implementation References
Search Engine Specific Documentation
- Configuring Proteome Discoverer 2.2 and forward for Compatibility with Scaffold
- Configuring Proteome Discoverer 2.0-2.1 for Compatibility with Scaffold
- Loading MaxQuant Results into Scaffold Products
- Configuring Proteome Discoverer
- Configuring Mascot Distiller for Loading Quantitative Data into Scaffold Q+S