Product Documentation
Find documentation about our products and information about the science in which we work
Product Documentation
Special Help Topics
- Determining Isolation Windows in DIA Raw Files
- DIA Proteomics Workflows: Choosing the Right Library
- Data Independent Acquisition Proteomics Resources - DIA Tips
- Upgrading Scaffold, Workstation Hardware, or your Operating System
- Updating MSConvert in Scaffold DIA
- UniProt FASTA References See all 24 articles
Frequently Asked Questions
- How to Completely Remove Scaffold from Your System
- Recommended FDR Settings for Loading Spectrum Mill Data into Scaffold
- Reference Libraries Used in Scaffold DIA
- DIA Proteomic Searches and FASTA File Size (Number of Entries)
- Processing Vendor Raw Data with ProteoWizard
- Scaffold Products and High Resolution Displays See all 21 articles
Search Engine Specific Documentation
- Configuring Proteome Discoverer 2.2 and forward for Compatibility with Scaffold
- Configuring Proteome Discoverer 2.0-2.1 for Compatibility with Scaffold
- Loading MaxQuant Results into Scaffold Products
- Configuring Proteome Discoverer
- Configuring Mascot Distiller for Loading Quantitative Data into Scaffold Q+S