Scaffold DIA

Proteome Software hopes to keep up with current trends by expanding our product line to include Data-Independent Acquisition proteomics. Existing Scaffold users will recognize the same user-friendly interface that has come to be the industry standard for visualizing proteomics data. Features include:

  • Turn-key program: go from raw data to reports using one program
  • Search raw data against a FASTA, a DIA chromatogram library, or a Scaffold/Skyline derived library
  • No need for RT calibration peptides
  • Protein-centric analysis with FDR control
  • Accurate quantitative values derived from fragment ion intensities
  • Robust statistical analysis that accounts for complex experimental designs
  • Intuitive graphical user interface, and an optional command line interface (CLI)
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