Scaffold DIA imports and analyzes data (using msconvert
) from various types of mass spectrometers. Data loading is conveniently performed through a dialog that guides the user in setting all of the parameters needed for data analysis and protein identification.
Scaffold DIA supports a number of vendors’ data file formats and open file formats.
- Thermo RAW Files (only the RAW file is needed)
- SCIEX WIFF (both the WIFF and the WIFF.SCAN files are required)
Scaffold DIA should support any data format (Bruker, Agilent, etc) with DIA windowing that can be processed by msconvert
, but only the two above (Thermo, SCIEX) are well tested.
See ProteoWizard documentation for details regarding msconvert
supported formats.
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